Publications

Recent Publications and Acknowledgements

We would appreciate the acknowledgement of the use of our services and infrastructure, by including the following statement in any resulting publication:  This research was supported in part by the NBI Computing infrastructure for Science (CiS) group through [list CiS resources]. [We specifically acknowledge the assistance of <relevant CiS staff members’ names>]

We would also appreciate the consistent use of the bold text above, followed by a list of the specific resources used and, if pertinent, the names of the CiS staff involved.

 

The CiS staff and infrastructure have been acknowledged in the below publications.

DNA demethylation is initiated in the central cells of Arabidopsis and rice

URL http://www.pnas.org/content/early/2016/12/09/1619047114.long

Kyunghyuk Parka,1, M. Yvonne Kimb,1, Martin Vickersc, Jin-Sup Parka, Youbong Hyuna, Takashi Okamotod,2, Daniel Zilbermanb,2, Robert L. Fischerb,2, Xiaoqi Fengc,2, Yeonhee Choia,2, and Stefan Scholtene,2

Author Affiliations

aDepartment of Biological Sciences, Seoul National University, 151-742 Seoul, South Korea;
bDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720;
cDepartment of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom;
dTokyo Metropolitan University, 192-0397 Tokyo, Japan;
eUniversity of Hamburg, 22609 Hamburg, Germany


Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues

URL http://www.pnas.org/content/early/2016/12/09/1619074114.full

Ping-Hung Hsieha,1 , Shengbo Heb,c,1Toby ButtressbHongbo GaobMatthew CouchmanbRobert L. Fischera,2Daniel Zilbermana,2, and Xiaoqi Fengb,c,2

Author Affiliations

aDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720;
bDepartment of Cell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom;
cCAS-JIC Centre of Excellence for Plant and Microbial Science (CEPAMS), John Innes Centre, Norwich NR4 7UH, United Kingdom


Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae

M. Tofazzal Islam, Daniel Croll, Pierre Gladieux, Darren M. Soanes, Antoine Persoons, Pallab Bhattacharjee, Md. Shaid Hossain, Dipali Rani Gupta, Md. Mahbubur Rahman, M. Golam Mahboob, Nicola Cook, Moin U. Salam, Musrat Zahan Surovy, Vanessa Bueno Sancho, João Leodato Nunes Maciel, Antonio Nhani Júnior, Vanina Lilián Castroagudín, Juliana T. de Assis Reges, Paulo Cezar Ceresini, Sebastien Ravel, Ronny Kellner, Elisabeth Fournier, Didier Tharreau, Marc-Henri Lebrun, Bruce A. McDonald, Timothy Stitt, Daniel Swan, Nicholas J. Talbot, Diane G. O. Saunders, Joe Win and Sophien Kamoun

URL https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-016-0309-7


Rapid cloning of disease-resistance genes in plants using mutagenesis and sequence capture

Burkhard Steuernagel, Sambasivam K Periyannan, Inmaculada Hernández-Pinzón, Kamil Witek, Matthew N Rouse, Guotai Yu, Asyraf Hatta, Mick Ayliffe, Harbans Bariana, Jonathan D G Jones, Evans S Lagudah & Brande B H Wulff

URL http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3543.html

Nature Biotechnology (2016), doi:10.1038/nbt.3543 , Published online 25 April 2016

Algal ancestor of land plants was preadapted for symbiosis

Pierre-Marc Delauxa,b,1,2, Guru V. Radhakrishnanb, Dhileepkumar Jayaramana,c, Jitender Cheemab, Mathilde Malbreild,e, Jeremy D. Volkeningf,g, Hiroyuki Sekimotoh, Tomoaki Nishiyamai, Michael Melkonianj, Lisa Pokornyk, Carl J. Rothfelsl,3, Heike Winter Sederoffm, Dennis W. Stevensonn, Barbara Surekj, Yong Zhango, Michael R. Sussmanf,g, Christophe Dunandd,e, Richard J. Morrisb, Christophe Rouxd,e, Gane Ka-Shu Wongo,p,q, Giles E. D. Oldroydb,and Jean-Michel Anéa,c

URL http://www.pnas.org/content/112/43/13390.full.pdf

Author Affiliations

aDepartment of Agronomy, University of Wisconsin, Madison, WI 53706; bJohn Innes Centre, Norwich NR4 7UH, United Kingdom; cDepartment of Bacteriology, University of Wisconsin, Madison, WI 53706; dLaboratoire de Recherche en Sciences Végétales, Université de Toulouse, Université Paul Sabatier, Unité Mixte de Recherche UMR5546, 31326 Castanet-Tolosan CEDEX, France; eCentre National de la Recherche Scientifique, UMR5546, 31326 Castanet-Tolosan CEDEX, France; fBiotechnology Center, University of Wisconsin, Madison, WI 53706; gDepartment of Biochemistry, University of Wisconsin, Madison, WI 53706; hDepartment of Chemical and Biological Sciences, Faculty of Science, Japan Women’s University, 2-8-1 Mejirodai, Bunkyo-ku, Tokyo, 112-8681 Japan; iAdvanced Science Research Center, Kanazawa University, 13-1 Takara-machi, Kanazawa, 920-0934, Japan; jBotany Department, Cologne Biocenter, University of Cologne, 50674 Cologne, Germany; kReal Jardín Botánico, 28014 Madrid, Spain; lDepartment of Zoology, University of British Columbia, Vancouver, BC, Canada V6T 1Z4; mDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27695; nNew York Botanical Garden, Bronx, NY 10458; oBeijing Genomics Institute-Shenzhen, Shenzhen 518083, China; pDepartment of Biological Sciences, University of Alberta, Edmonton AB, T6G 2E9, Canada; and qDepartment of Medicine, University of Alberta, Edmonton AB, T6G 2E, Canada

 


Incorporating prior knowledge improves detection of differences in bacterial growth rate

Lydia M Rickett12*, Nick Pullen1, Matthew Hartley1, Cyril Zipfel2, Sophien Kamoun2, József Baranyi3 and Richard J. Morris1

URL http://www.biomedcentral.com/1752-0509/9/60

*Corresponding author: Lydia M Rickett lydia.rickett@sainsbury-laboratory.ac.uk

Author Affiliations
1John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
2The Sainsbury Laboratory, Norwich Research Park, Colney Lane, Norwich NR4 7RG, UK
3Institute of Food Research, Norwich Research Park, Colney Lane, Norwich NR4 7UA, UK

 

Acknowledging us

We would appreciate the acknowledgement of the use of our services and infrastructure, by including the following statement in any resulting publication:

This research was supported in part by the NBI Computing infrastructure for Science (CiS) group through [list CiS resources]. [We specifically acknowledge the assistance of <relevant CiS staff members’ names>]

We would also appreciate the consistent use of the bold text above, followed by a list of the specific resources used and, if pertinent, the names of the CiS staff involved.